.. RNAMake documentation master file, created by
   sphinx-quickstart on Tue Apr 12 14:54:33 2016.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to RNAMake's documentation!
===================================

Contents:


Data Structures
---------------

.. toctree::
   :maxdepth: 2

   auto/graph
   auto/tree

Utilities 
---------

.. toctree::
   :maxdepth: 2

   auto/transform
   auto/transformations
   auto/sqlite_library
   auto/x3dna

Secondary Structure
-------------------

.. toctree::
   :maxdepth: 2

   auto/secondary_structure


3D Structure
------------

.. toctree::
   :maxdepth: 2

   auto/atom
   auto/residue 
   auto/residue_type
   auto/chain
   auto/structure 
   auto/basepair
   auto/pdb_parser
   auto/motif_type
   auto/rna_structure